using BaseCellSimulation.Enzyms;
using BaseCellSimulation.Enzyms.Nucleus;
using System;
using System.Collections.Generic;
using System.Linq;
using System.Text;
using System.Threading.Tasks;

namespace BaseCellSimulation
{
    /// <summary>
    /// Cell Core produces RNA uses ATP generates small amount of waste
    /// </summary>
    /// <param name="cellname"></param>
    /// <param name="transcriptionRate"></param>
    /// <param name="atpPerNucloide"></param>
    public class Nucleus : Organell
    {
        public List<InternalEnzym> enzyms = new List<InternalEnzym>();

        private readonly string name;

        public Nucleus() : this("Nucleus") { }

        public Nucleus(string cellname)
        {
            name = cellname;
            enzyms.Add(new DNA_Polymerase_Delta());
            enzyms.Add(new DNMT1());
            enzyms.Add(new HistoneAcetyltransferase());
            enzyms.Add(new HistoneDeacetylase());
            enzyms.Add(new PARP1());
            enzyms.Add(new Topoisomerase_II());
            enzyms.Add(new RNA_Polymerase_II());

        }


        public string getName()
        {
            return name;
        }

        public void applyChanges(CellRessources Resources, double dt)
        {
            
            foreach (InternalEnzym enzym in enzyms)
            {
                enzym.ApplyChanges(Resources, dt);
            }
        }

        public void calculateRate(CellRessources res)
        {
            foreach (InternalEnzym enzym in enzyms)
            {
                enzym.ComputeRate(res.Res);
            }
        }
    }
}