{ "$schema": "http://json-schema.org/draft-04/schema", "type": "object", "properties": { "energy": { "type": "object", "properties": { "ATP": { "type": "number", "minimum": 0, "description": "Adenosine-triphosphate" }, "ADP": { "type": "number", "minimum": 0, "description": "Adenosine-diphosphate" }, "AMP": { "type": "number", "minimum": 0, "description": "Adenosine-monophosphate" }, "NAD+": { "type": "number", "minimum": 0, "description": "Nicotinamide adenine dinucleotide (oxidized form)" }, "NADH": { "type": "number", "minimum": 0, "description": "Nicotinamide adenine dinucleotide (reduced form)" }, "GTP": { "type": "number", "minimum": 0, "description": "Guanosine-triphosphate" }, "GDP": { "type": "number", "minimum": 0, "description": "Guanosine-diphosphate" }, "Pi": { "type": "number", "minimum": 0, "description": "Inorganic phosphate" }, "PPi": { "type": "number", "minimum": 0, "description": "Inorganic pyrophosphate" } } }, "glucose": { "type": "number", "minimum": 0, "description": "Glucose concentration" }, "G6P": { "type": "number", "minimum": 0, "description": "Glucose-6-phosphate concentration" }, "F6P": { "type": "number", "minimum": 0, "description": "Fructose-6-phosphate concentration" }, "F1,6BP": { "type": "number", "minimum": 0, "description": "Fructose-1,6-bisphosphate concentration" }, "GA3P": { "type": "number", "minimum": 0, "description": "Glyceraldehyde-3-phosphate concentration" }, "1,3BPG": { "type": "number", "minimum": 0, "description": "1,3-Bisphosphoglycerate concentration" }, "3PG": { "type": "number", "minimum": 0, "description": "3-Phosphoglycerate concentration" }, "2PG": { "type": "number", "minimum": 0, "description": "2-Phosphoglycerate concentration" }, "PEP": { "type": "number", "minimum": 0, "description": "Phosphoenolpyruvate concentration" }, "Pyruvate": { "type": "number", "minimum": 0, "description": "Pyruvate concentration" }, "Lactate": { "type": "number", "minimum": 0, "description": "Lactate concentration" }, "CO2": { "type": "number", "minimum": 0, "description": "Carbon dioxide concentration" }, "AcCoA": { "type": "number", "minimum": 0, "description": "Acetyl-Coenzyme A concentration" }, "AminoAcids": { "type": "number", "minimum": 0, "description": "Total amino acids concentration" }, "NucleicAcids": { "type": "number", "minimum": 0, "description": "Total nucleic acids concentration" }, "Nucleotides": { "type": "number", "minimum": 0, "description": "Total nucleotides concentration" }, "NTP": { "type": "number", "minimum": 0, "description": "Total nucleoside triphosphates concentration" }, "dNTP": { "type": "number", "minimum": 0, "description": "Total deoxynucleoside triphosphates concentration" }, "mRNA": { "type": "number", "minimum": 0, "description": "Total messenger RNA concentration" }, "DNA_damage": { "type": "number", "minimum": 0, "description": "Amount of DNA damage" }, "SAM": { "type": "number", "minimum": 0, "description": "S-Adenosyl methionine concentration" }, "MET": { "type": "number", "minimum": 0, "description": "Methionine concentration" }, "SAH": { "type": "number", "minimum": 0, "description": "S-Adenosyl homocysteine concentration" }, "Homocysteine": { "type": "number", "minimum": 0, "description": "Homocysteine concentration" }, "Adenosin": { "type": "number", "minimum": 0, "description": "Adenosine concentration" }, "tRNA": { "type": "number", "minimum": 0, "description": "Total transfer RNA concentration" }, "Aminocylated_tRNA": { "type": "number", "minimum": 0, "description": "Total aminoacylated tRNA concentration" }, "H+": { "type": "number", "minimum": 0, "description": "Proton concentration" }, "Na+": { "type": "number", "minimum": 0, "description": "Sodium ion concentration" }, "K+": { "type": "number", "minimum": 0, "description": "Potassium ion concentration" }, "H2O2": { "type": "number", "minimum": 0, "description": "Hydrogen peroxide concentration" }, "B12": { "type": "number", "minimum": 0, "description": "Vitamin B12 concentration" }, "THF": { "type": "number", "minimum": 0, "description": "Tetrahydrofolate concentration" }, "MethylTHF": { "type": "number", "minimum": 0, "description": "5-Methyltetrahydrofolate concentration" }, "CytoSolCA": { "type": "number", "minimum": 0, "description": "Cytosolic calcium concentration" }, "rERCa": { "type": "number", "minimum": 0, "description": "Rough endoplasmic reticulum calcium concentration" }, "sERCa": { "type": "number", "minimum": 0, "description": "Smooth endoplasmic reticulum calcium concentration" } } }