CellSimulation/BaseCellSimulation/Membrane.cs

using BaseCellSimulation.Enzyms;
using BaseCellSimulation.Enzyms.Membrane;
using BaseCellSimulation.Enzyms.Membrane.GLUT;

namespace BaseCellSimulation
{
    /// <summary>
    /// Cell membrane small leakage and passive disposal of waste
    /// </summary>
    /// <param name="cellname"></param>
    /// <param name="glucoseImportRate"></param>
    /// <param name="oxygenImportRate"></param>
    /// <param name="wasteOuttakeRate"></param>
    public class Membrane : Organell
    {
        public readonly List<MembranEnzyme> enzyms = new List<MembranEnzyme>();
        public readonly List<GLUT1> glutTransporters = new List<GLUT1>();
        private readonly string name;

        public Membrane() : this("Membrane") { }

        public Membrane(string cellname)
        {
            this.name = cellname;
            enzyms.Add(new KLeakChannel());
            enzyms.Add(new MCT());
            enzyms.Add(new NaK_ATPase());
            enzyms.Add(new NCX());
            enzyms.Add(new PMCA());
            // Add GLUT transporters
            glutTransporters.Add(new GLUT1());
        }

        public string getName()
        {
            return name;
        }

        public void applyChanges(CellRessources res, double dt)
        {

            foreach (MembranEnzyme enzyme in enzyms)
            {
                enzyme.ApplyChanges(res, dt);
            }
            foreach (GLUT1 glut in glutTransporters)
            {
                glut.ApplyChanges(res, dt);
            }
            // --- 5. Kleine Verluste anderer Stoffe (Diffusionslecks) ---
            res.Res.Carbon.Glucose = Math.Max(0, res.Res.Carbon.Glucose - 0.001 * dt);
            res.Res.Oxygen = Math.Max(0, res.Res.Oxygen - 0.001 * dt);
        }

        public void calculateRate(CellRessources res)
        {
            foreach (MembranEnzyme enzyme in enzyms)
            {
                double gradient = enzyme.CalculateGradient(res);
                enzyme.ComputeRate(gradient, res.Env);
            }
            double glutGradient = glutTransporters[0].CalculateGradient(res);

            foreach (GLUT1 glut in glutTransporters)
            {
                glut.ComputeRate(glutGradient, res.Env);
            }
        }
    }
}