CellSimulation/BaseCellSimulation/CellData/cellRessources.schema.json

{
  "$schema": "http://json-schema.org/draft-04/schema",
  "type": "object",
  "properties": {
    "energy": {
      "type": "object",
      "properties": {
        "ATP": {
          "type": "number",
          "minimum": 0,
          "description": "Adenosine-triphosphate"
        },
        "ADP": {
          "type": "number",
          "minimum": 0,
          "description": "Adenosine-diphosphate"
        },
        "AMP": {
          "type": "number",
          "minimum": 0,
          "description": "Adenosine-monophosphate"
        },
        "NAD+": {
          "type": "number",
          "minimum": 0,
          "description": "Nicotinamide adenine dinucleotide (oxidized form)"
        },
        "NADH": {
          "type": "number",
          "minimum": 0,
          "description": "Nicotinamide adenine dinucleotide (reduced form)"
        },
        "GTP": {
          "type": "number",
          "minimum": 0,
          "description": "Guanosine-triphosphate"
        },
        "GDP": {
          "type": "number",
          "minimum": 0,
          "description": "Guanosine-diphosphate"
        },
        "Pi": {
          "type": "number",
          "minimum": 0,
          "description": "Inorganic phosphate"
        },
        "PPi": {
          "type": "number",
          "minimum": 0,
          "description": "Inorganic pyrophosphate"
        }
      }
    },
    "glucose": {
      "type": "number",
      "minimum": 0,
      "description": "Glucose concentration"
    },
    "G6P": {
      "type": "number",
      "minimum": 0,
      "description": "Glucose-6-phosphate concentration"
    },
    "F6P": {
      "type": "number",
      "minimum": 0,
      "description": "Fructose-6-phosphate concentration"
    },
    "F1,6BP": {
      "type": "number",
      "minimum": 0,
      "description": "Fructose-1,6-bisphosphate concentration"
    },
    "GA3P": {
      "type": "number",
      "minimum": 0,
      "description": "Glyceraldehyde-3-phosphate concentration"
    },
    "1,3BPG": {
      "type": "number",
      "minimum": 0,
      "description": "1,3-Bisphosphoglycerate concentration"
    },
    "3PG": {
      "type": "number",
      "minimum": 0,
      "description": "3-Phosphoglycerate concentration"
    },
    "2PG": {
      "type": "number",
      "minimum": 0,
      "description": "2-Phosphoglycerate concentration"
    },
    "PEP": {
      "type": "number",
      "minimum": 0,
      "description": "Phosphoenolpyruvate concentration"
    },
    "Pyruvate": {
      "type": "number",
      "minimum": 0,
      "description": "Pyruvate concentration"
    },
    "Lactate": {
      "type": "number",
      "minimum": 0,
      "description": "Lactate concentration"
    },
    "CO2": {
      "type": "number",
      "minimum": 0,
      "description": "Carbon dioxide concentration"
    },
    "AcCoA": {
      "type": "number",
      "minimum": 0,
      "description": "Acetyl-Coenzyme A concentration"
    },
    "AminoAcids": {
      "type": "number",
      "minimum": 0,
      "description": "Total amino acids concentration"
    },
    "NucleicAcids": {
      "type": "number",
      "minimum": 0,
      "description": "Total nucleic acids concentration"
    },
    "Nucleotides": {
      "type": "number",
      "minimum": 0,
      "description": "Total nucleotides concentration"
    },
    "NTP": {
      "type": "number",
      "minimum": 0,
      "description": "Total nucleoside triphosphates concentration"
    },
    "dNTP": {
      "type": "number",
      "minimum": 0,
      "description": "Total deoxynucleoside triphosphates concentration"
    },
    "mRNA": {
      "type": "number",
      "minimum": 0,
      "description": "Total messenger RNA concentration"
    },
    "DNA_damage": {
      "type": "number",
      "minimum": 0,
      "description": "Amount of DNA damage"
    },
    "SAM": {
      "type": "number",
      "minimum": 0,
      "description": "S-Adenosyl methionine concentration"
    },
    "MET": {
      "type": "number",
      "minimum": 0,
      "description": "Methionine concentration"
    },
    "SAH": {
      "type": "number",
      "minimum": 0,
      "description": "S-Adenosyl homocysteine concentration"
    },
    "Homocysteine": {
      "type": "number",
      "minimum": 0,
      "description": "Homocysteine concentration"
    },
    "Adenosin": {
      "type": "number",
      "minimum": 0,
      "description": "Adenosine concentration"
    },
    "tRNA": {
      "type": "number",
      "minimum": 0,
      "description": "Total transfer RNA concentration"
    },
    "Aminocylated_tRNA": {
      "type": "number",
      "minimum": 0,
      "description": "Total aminoacylated tRNA concentration"
    },
    "H+": {
      "type": "number",
      "minimum": 0,
      "description": "Proton concentration"
    },
    "Na+": {
      "type": "number",
      "minimum": 0,
      "description": "Sodium ion concentration"
    },
    "K+": {
      "type": "number",
      "minimum": 0,
      "description": "Potassium ion concentration"
    },
    "H2O2": {
      "type": "number",
      "minimum": 0,
      "description": "Hydrogen peroxide concentration"
    },
    "B12": {
      "type": "number",
      "minimum": 0,
      "description": "Vitamin B12 concentration"
    },
    "THF": {
      "type": "number",
      "minimum": 0,
      "description": "Tetrahydrofolate concentration"
    },
    "MethylTHF": {
      "type": "number",
      "minimum": 0,
      "description": "5-Methyltetrahydrofolate concentration"
    },
    "CytoSolCA": {
      "type": "number",
      "minimum": 0,
      "description": "Cytosolic calcium concentration"
    },
    "rERCa": {
      "type": "number",
      "minimum": 0,
      "description": "Rough endoplasmic reticulum calcium concentration"
    },
    "sERCa": {
      "type": "number",
      "minimum": 0,
      "description": "Smooth endoplasmic reticulum calcium concentration"
    }
  }
}